Single Nucleotide Polymorphisms of One-Carbon Metabolism and Cancers of the Esophagus, Stomach, and Liver in a Chinese Population
Identifieur interne : 000127 ( Main/Exploration ); précédent : 000126; suivant : 000128Single Nucleotide Polymorphisms of One-Carbon Metabolism and Cancers of the Esophagus, Stomach, and Liver in a Chinese Population
Auteurs : Shen-Chih Chang [États-Unis] ; Po-Yin Chang [États-Unis] ; Brendan Butler [États-Unis] ; Binh Y. Goldstein [États-Unis] ; Lina Mu [États-Unis] ; Lin Cai [République populaire de Chine] ; Nai-Chieh Y. You [États-Unis] ; Aileen Baecker [États-Unis] ; Shun-Zhang Yu [République populaire de Chine] ; David Heber [États-Unis] ; Qing-Yi Lu [États-Unis] ; Liming Li [République populaire de Chine] ; Sander Greenland [États-Unis] ; Zuo-Feng Zhang [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
One-carbon metabolism (folate metabolism) is considered important in carcinogenesis because of its involvement in DNA synthesis and biological methylation reactions. We investigated the associations of single nucleotide polymorphisms (SNPs) in folate metabolic pathway and the risk of three GI cancers in a population-based case-control study in Taixing City, China, with 218 esophageal cancer cases, 206 stomach cancer cases, 204 liver cancer cases, and 415 healthy population controls. Study participants were interviewed with a standardized questionnaire, and blood samples were collected after the interviews. We genotyped SNPs of the
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DOI: 10.1371/journal.pone.0109235
PubMed: 25337902
PubMed Central: 4206280
Affiliations:
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CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Chang, Po Yin" sort="Chang, Po Yin" uniqKey="Chang P" first="Po-Yin" last="Chang">Po-Yin Chang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Butler, Brendan" sort="Butler, Brendan" uniqKey="Butler B" first="Brendan" last="Butler">Brendan Butler</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Goldstein, Binh Y" sort="Goldstein, Binh Y" uniqKey="Goldstein B" first="Binh Y." last="Goldstein">Binh Y. Goldstein</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Mu, Lina" sort="Mu, Lina" uniqKey="Mu L" first="Lina" last="Mu">Lina Mu</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Social and Preventive Medicine, State University of New York at Buffalo, Buffalo, NY, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Social and Preventive Medicine, State University of New York at Buffalo, Buffalo, NY</wicri:regionArea><wicri:noRegion>NY</wicri:noRegion></affiliation></author><author><name sortKey="Cai, Lin" sort="Cai, Lin" uniqKey="Cai L" first="Lin" last="Cai">Lin Cai</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Epidemiology, Fujian Medical University, Fuzhou, Fujian, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Epidemiology, Fujian Medical University, Fuzhou, Fujian</wicri:regionArea><wicri:noRegion>Fujian</wicri:noRegion></affiliation></author><author><name sortKey="You, Nai Chieh Y" sort="You, Nai Chieh Y" uniqKey="You N" first="Nai-Chieh Y." last="You">Nai-Chieh Y. You</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Baecker, Aileen" sort="Baecker, Aileen" uniqKey="Baecker A" first="Aileen" last="Baecker">Aileen Baecker</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Yu, Shun Zhang" sort="Yu, Shun Zhang" uniqKey="Yu S" first="Shun-Zhang" last="Yu">Shun-Zhang Yu</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Department of Epidemiology, Fudan University School of Public Health, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Epidemiology, Fudan University School of Public Health, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Heber, David" sort="Heber, David" uniqKey="Heber D" first="David" last="Heber">David Heber</name><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Center for Human Nutrition, University of California Los Angeles David Geffen School of Medicine, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Human Nutrition, University of California Los Angeles David Geffen School of Medicine, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Qing Yi" sort="Lu, Qing Yi" uniqKey="Lu Q" first="Qing-Yi" last="Lu">Qing-Yi Lu</name><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Center for Human Nutrition, University of California Los Angeles David Geffen School of Medicine, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Human Nutrition, University of California Los Angeles David Geffen School of Medicine, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Li, Liming" sort="Li, Liming" uniqKey="Li L" first="Liming" last="Li">Liming Li</name><affiliation wicri:level="3"><nlm:aff id="aff6"><addr-line>Department of Epidemiology, Peking University School of Public Health, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Epidemiology, Peking University School of Public Health, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Greenland, Sander" sort="Greenland, Sander" uniqKey="Greenland S" first="Sander" last="Greenland">Sander Greenland</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7"><addr-line>Department of Statistics, University of California Los Angeles College of Letters and Science, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Statistics, University of California Los Angeles College of Letters and Science, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Zuo Feng" sort="Zhang, Zuo Feng" uniqKey="Zhang Z" first="Zuo-Feng" last="Zhang">Zuo-Feng Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA</wicri:regionArea><wicri:noRegion>CA</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>One-carbon metabolism (folate metabolism) is considered important in carcinogenesis because of its involvement in DNA synthesis and biological methylation reactions. We investigated the associations of single nucleotide polymorphisms (SNPs) in folate metabolic pathway and the risk of three GI cancers in a population-based case-control study in Taixing City, China, with 218 esophageal cancer cases, 206 stomach cancer cases, 204 liver cancer cases, and 415 healthy population controls. Study participants were interviewed with a standardized questionnaire, and blood samples were collected after the interviews. We genotyped SNPs of the <italic>MTHFR</italic>, <italic>MTR</italic>, <italic>MTRR</italic>, <italic>DNMT1</italic>, and <italic>ALDH2</italic> genes, using PCR-RFLP, SNPlex, or TaqMan assays. To account for multiple comparisons and reduce the chances of false reports, we employed semi-Bayes (SB) shrinkage analysis. After shrinkage and adjusting for potential confounding factors, we found positive associations between <italic>MTHFR</italic> rs1801133 and stomach cancer (any T versus C/C, SB odds-ratio [SBOR]: 1.79, 95% posterior limits: 1.18, 2.71) and liver cancer (SBOR: 1.51, 95% posterior limits: 0.98, 2.32). There was an inverse association between <italic>DNMT1</italic> rs2228612 and esophageal cancer (any G versus A/A, SBOR: 0.60, 95% posterior limits: 0.39, 0.94). In addition, we detected potential heterogeneity across alcohol drinking status for ORs relating <italic>MTRR</italic> rs1801394 to esophageal (posterior homogeneity <italic>P</italic> = 0.005) and stomach cancer (posterior homogeneity <italic>P</italic> = 0.004), and ORs relating <italic>MTR</italic> rs1805087 to liver cancer (posterior homogeneity <italic>P</italic> = 0.021). Among non-alcohol drinkers, the variant allele (allele G) of these two SNPs was inversely associated with the risk of these cancers; while a positive association was observed among ever-alcohol drinkers. Our results suggest that genetic polymorphisms related to one-carbon metabolism may be associated with cancers of the esophagus, stomach, and liver. Heterogeneity across alcohol consumption status of the associations between <italic>MTR</italic>/<italic>MTRR</italic> polymorphisms and these cancers indicates potential interactions between alcohol drinking and one-carbon metabolic pathway.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Fang, Y" uniqKey="Fang Y">Y Fang</name></author><author><name sortKey="Xiao, F" uniqKey="Xiao F">F Xiao</name></author><author><name sortKey="An, Z" uniqKey="An Z">Z An</name></author><author><name sortKey="Hao, L" uniqKey="Hao L">L Hao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Qin, X" uniqKey="Qin X">X Qin</name></author><author><name sortKey="Peng, Q" uniqKey="Peng Q">Q Peng</name></author><author><name sortKey="Chen, Z" uniqKey="Chen Z">Z Chen</name></author><author><name sortKey="Deng, Y" uniqKey="Deng Y">Y Deng</name></author><author><name sortKey="Huang, S" uniqKey="Huang 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sortKey="Richiardi, L" uniqKey="Richiardi L">L Richiardi</name></author><author><name sortKey="Merletti, F" uniqKey="Merletti F">F Merletti</name></author><author><name sortKey="Pentenero, M" uniqKey="Pentenero M">M Pentenero</name></author><author><name sortKey="Gervasio, C" uniqKey="Gervasio C">C Gervasio</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chung, Cs" uniqKey="Chung C">CS Chung</name></author><author><name sortKey="Lee, Yc" uniqKey="Lee Y">YC Lee</name></author><author><name sortKey="Liou, Jm" uniqKey="Liou J">JM Liou</name></author><author><name sortKey="Wang, Cp" uniqKey="Wang C">CP Wang</name></author><author><name sortKey="Ko, Jy" uniqKey="Ko J">JY Ko</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hashibe, M" uniqKey="Hashibe M">M Hashibe</name></author><author><name sortKey="Boffetta, P" uniqKey="Boffetta P">P Boffetta</name></author><author><name sortKey="Zaridze, D" uniqKey="Zaridze D">D Zaridze</name></author><author><name sortKey="Shangina, O" uniqKey="Shangina O">O Shangina</name></author><author><name sortKey="Szeszenia Dabrowska, N" uniqKey="Szeszenia Dabrowska N">N Szeszenia-Dabrowska</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Greenland, S" uniqKey="Greenland S">S Greenland</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fredriksen, A" uniqKey="Fredriksen A">A Fredriksen</name></author><author><name sortKey="Meyer, K" uniqKey="Meyer K">K Meyer</name></author><author><name sortKey="Ueland, Pm" uniqKey="Ueland P">PM Ueland</name></author><author><name sortKey="Vollset, Se" uniqKey="Vollset S">SE Vollset</name></author><author><name sortKey="Grotmol, T" uniqKey="Grotmol T">T Grotmol</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="États-Unis"><noRegion><name sortKey="Chang, Shen Chih" sort="Chang, Shen Chih" uniqKey="Chang S" first="Shen-Chih" last="Chang">Shen-Chih Chang</name></noRegion><name sortKey="Baecker, Aileen" sort="Baecker, Aileen" uniqKey="Baecker A" first="Aileen" last="Baecker">Aileen Baecker</name><name sortKey="Butler, Brendan" sort="Butler, Brendan" uniqKey="Butler B" first="Brendan" last="Butler">Brendan Butler</name><name sortKey="Chang, Po Yin" sort="Chang, Po Yin" uniqKey="Chang P" first="Po-Yin" last="Chang">Po-Yin Chang</name><name sortKey="Goldstein, Binh Y" sort="Goldstein, Binh Y" uniqKey="Goldstein B" first="Binh Y." last="Goldstein">Binh Y. Goldstein</name><name sortKey="Greenland, Sander" sort="Greenland, Sander" uniqKey="Greenland S" first="Sander" last="Greenland">Sander Greenland</name><name sortKey="Greenland, Sander" sort="Greenland, Sander" uniqKey="Greenland S" first="Sander" last="Greenland">Sander Greenland</name><name sortKey="Heber, David" sort="Heber, David" uniqKey="Heber D" first="David" last="Heber">David Heber</name><name sortKey="Lu, Qing Yi" sort="Lu, Qing Yi" uniqKey="Lu Q" first="Qing-Yi" last="Lu">Qing-Yi Lu</name><name sortKey="Mu, Lina" sort="Mu, Lina" uniqKey="Mu L" first="Lina" last="Mu">Lina Mu</name><name sortKey="You, Nai Chieh Y" sort="You, Nai Chieh Y" uniqKey="You N" first="Nai-Chieh Y." last="You">Nai-Chieh Y. You</name><name sortKey="Zhang, Zuo Feng" sort="Zhang, Zuo Feng" uniqKey="Zhang Z" first="Zuo-Feng" last="Zhang">Zuo-Feng Zhang</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Cai, Lin" sort="Cai, Lin" uniqKey="Cai L" first="Lin" last="Cai">Lin Cai</name></noRegion><name sortKey="Li, Liming" sort="Li, Liming" uniqKey="Li L" first="Liming" last="Li">Liming Li</name><name sortKey="Yu, Shun Zhang" sort="Yu, Shun Zhang" uniqKey="Yu S" first="Shun-Zhang" last="Yu">Shun-Zhang Yu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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